tfSpace.h File Reference

#include <mdcore_config.h>
#include "tfSpace_cell.h"
#include <vector>

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Classes
struct	TissueForge::verlet_entry
struct	TissueForge::cellpair
struct	TissueForge::celltuple
struct	TissueForge::space

Namespaces
namespace	TissueForge
	Include Python header, disable linking to pythonX_d.lib on Windows in debug mode.

Macros
#define	space_partlist_incr   100
#define	space_maxtuples   4
#define	space_verlet_maxpairs   800
#define	space_cellid(s, i, j, k)
#define	celldims_cellid(cdim, i, j, k)
#define	space_pairind(i, j)

Typedefs
typedef struct TissueForge::space	TissueForge::space

Enumerations
enum	PeriodicFlags {   space_periodic_none = 0 , space_periodic_x = 1 << 0 , space_periodic_y = 1 << 1 , space_periodic_z = 1 << 2 ,   space_periodic_full = (1 << 0) | (1 << 1) | (1 << 2) , space_periodic_ghost_x = 1 << 3 , space_periodic_ghost_y = 1 << 4 , space_periodic_ghost_z = 1 << 5 ,   space_periodic_ghost_full = (1 << 3) | (1 << 4) | (1 << 5) , SPACE_FREESLIP_X = 1 << 6 , SPACE_FREESLIP_Y = 1 << 7 , SPACE_FREESLIP_Z = 1 << 8 ,   SPACE_FREESLIP_FULL = (1 << 6) | (1 << 7) | (1 << 8) }

Functions
HRESULT	TissueForge::space_init (struct space *s, const FPTYPE *origin, const FPTYPE *dim, FPTYPE *L, FPTYPE cutoff, const struct BoundaryConditions *bc)
	Initialize the space with the given dimensions.
int	TissueForge::space_getsid (struct space *s, struct space_cell **ci, struct space_cell **cj, FPTYPE *shift)
	Get the sort-ID and flip the cells if necessary.
HRESULT	TissueForge::space_shuffle (struct space *s)
	Run through the cells of a space and make sure every particle is in its place.
HRESULT	TissueForge::space_shuffle_local (struct space *s)
	Run through the non-ghost cells of a space and make sure every particle is in its place.
HRESULT	TissueForge::space_growparts (struct space *s, unsigned int size_incr)
	Grow the parts allocated to a space.
HRESULT	TissueForge::space_addpart (struct space *s, struct Particle *p, FPTYPE *x, struct Particle **result)
	Add a #part to a space at the given coordinates. The given particle p is only used for the attributes, it itself is not added, rather a new memory block is allocated, and the contents of p get copied in there.
HRESULT	TissueForge::space_addparts (struct space *s, int nr_parts, struct Particle **parts, FPTYPE **xparts)
int	TissueForge::space_get_cellids_for_pos (struct space *s, FPTYPE *x, int *cellids)
HRESULT	TissueForge::space_del_particle (struct space *s, int pid)
HRESULT	TissueForge::space_update_style (struct space *s)
HRESULT	TissueForge::space_prepare_tasks (struct space *s)
	Prepare the tasks before a time step.
HRESULT	TissueForge::space_prepare (struct space *s)
	Prepare the space before a time step.
HRESULT	TissueForge::space_getpos (struct space *s, int id, FPTYPE *x)
	Get the absolute position of a particle.
HRESULT	TissueForge::space_setpos (struct space *s, int id, FPTYPE *x)
	Set the absolute position of a particle.
HRESULT	TissueForge::space_flush (struct space *s)
	Clear all particles from this space.
HRESULT	TissueForge::space_flush_ghosts (struct space *s)
	Clear all particles from the ghost cells in this space.
struct task *	TissueForge::space_addtask (struct space *s, int type, int subtype, int flags, int i, int j)
	Add a task to the given space.
HRESULT	TissueForge::space_verlet_init (struct space *s, int list_global)
	Initialize the Verlet-list data structures.
int	TissueForge::space_gettuple (struct space *s, struct celltuple **out, int wait)
	Get the next free celltuple from the space.
int	TissueForge::space_getcell (struct space *s, struct space_cell **out)
	Get the next unprocessed cell from the spaece.
int	TissueForge::space_verlet_force (struct space *s, FPTYPE *f, FPTYPE epot)
	Collect forces and potential energies.
HRESULT	TissueForge::space_releasepair (struct space *s, int ci, int cj)
	Free the cells involved in the current pair.

Macro Definition Documentation

celldims_cellid

#define celldims_cellid	(		cdim,
			i,
			j,
			k )

Value:

(  ((i)*cdim[1] + (j)) * cdim[2] + (k) )

space_cellid

#define space_cellid	(		s,
			i,
			j,
			k )

Value:

(  ((i)*(s)->cdim[1] + (j)) * (s)->cdim[2] + (k) )

Converts the index triplet (i, j, k) to the cell id in the #space s.

space_maxtuples

#define space_maxtuples   4

Maximum number of cells per tuple.

space_pairind

#define space_pairind	(		i,
			j )

Value:

( space_maxtuples*(i) - (i)*((i)+1)/2 + (j) )

Convert tuple ids into the pairid index.

space_verlet_maxpairs

#define space_verlet_maxpairs   800

Maximum number of interactions per particle in the Verlet list.